& Van Soest, R.W.M. Hoegh-Guldberg (eds). WA: Kimberley from Buccaneer Archipelago to Ashmore Reef. Inferring correlation networks from genomic survey data. 451, Fransiscum Varrentrapp, Hagae. River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon. Sponges are known to host dense and diverse microbial communities (see Taylor et al., 2007; Webster et al., 2010; Lee et al., 2011; Schmitt, Hentschel & Taylor, 2012 and references cited within), yet little is known about how the associations vary with biogeography and environment. Porifera. 8600 Rockville Pike Bergquist, P.R. Foliose Dictyoceratida of the Australian Great Barrier Reef. Body flexible, fibrous, tears easily longitudinal. (1988). Ecology and exploration of the rare biosphere. Wilkinson CR, Trott LA. (B) Abundance boxplot of co-occurring taxa affiliated to the phyla Cyanobacteria (C) and Bacteroidetes (B) for inshore (I) and offshore (O) locations. Biota; Animalia . The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Controlling the false discovery rate: a practical and powerful approach to multiple testing. -, Bell JJ, Davy SK, Jones T, Taylor MW, Webster NS. Eutrophication has no short-term effect on the Cymbastela stipitata holobiont. The Great Barrier Reef: Biology, Environment and management. Foliose Dictyoceratida of the Australian Great Barrier Reef. The microbiome of C. foliascens exhibited exceptionally high microbial richness, with more than 9,000 OTUs identified at 97% sequence similarity. Image content on this page is copyright WA Museum. Lucas Moitinho-Silva analyzed the data, prepared figures and/or tables, reviewed drafts of the paper. Reference: How to cite this resource - Schoch CL, et al. Proceedings of the 5th international coral reef congress; 1985. http://epubs.aims.gov.au//handle/11068/6477, http://www.worldagroforestry.org/resources/databases/tree-diversity-analysis, http://www.reefbase.org/resource_center/publication/pub_19353.aspx. Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters. (2008). Here we compared the microbiome of an ecologically important sponge species, Carteriospongia foliascens, over a large geographic area and identified environmental factors likely responsible for driving microbial community differences between inshore and offshore locations using co-occurrence networks (NWs). 2023 Jun 16;99(7):fiad061. In: P. Hutchings, M.J. Kingsford & I.O. Steindler L, Huchon D, Avni A, Ilan M. 16S rRNA phylogeny of sponge-associated cyanobacteria. sharing sensitive information, make sure youre on a federal Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. ; Ayling, A.M.; Wilkinson, C.R. Pyrosequencing reveals the microbial communities in the Red Sea sponge Carteriospongia foliascens and their impressive shifts in abnormal tissues. Carteriospongia foliascens - SeaLifeBase Bell JJ. 3B). Characterised microscopically by vermiform fibres. (2 volumes) Kluwer Academic/ Plenum Publishers: New York, 1708 + xvliii. : Marine Ecology. 9 (4): 291-319. https://www.biodiversitylibrary.org/page/6019361, https://biodiversity.org.au/afd/taxa/PORIFERA/checklist, To Biodiversity Heritage Library (1 publication), To GenBank (3910 nucleotides; 0 proteins), To Sponge Barcoding Database (Carteriospongia foliascens), To Yale Peabody Museum of Natural History (YPM IZ 005031.PR). Spatial patterns in host-associated and free-living bacterial communities across six temperate estuaries. Checklist of marine biota of China seas. Nicole S. Webster conceived and designed the experiments, contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper. 1028-1050. OTU classification denoted within the nodes. Given that light is one of the most important factors influencing phototrophic sponge distributions (Wilkinson & Trott, 1985), sponges like C. foliascens are more commonly found between 02 m on turbid inshore reefs (Abdul Wahab et al., 2014a) compared to 1030 m in less turbid environments on mid-shelf reefs (Wilkinson & Evans, 1989). Luter HM, Gibb K, Webster NS. Notably, community differences in samples from Torres Strait were driven by a higher abundance of two Alphaproteobacteria OTUs (Fig. A manual and software for common statistical methods for ecology and biodiversity studies. Samples were clustered by location using the Cluster analysis in PRIMER/PERMANOVA (top). Taylor MW, Radax R, Steger D, Wagner M. Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Gut microbiome of century-old snail specimens stable across time in preservation. Alpha diversity metrics (average S.E.) Natural volcanic CO2 seeps reveal future trajectories for hostmicrobial associations in corals and sponges. Accessibility Family Thorectidae Bergquist, 1978. Author emails, respectively: strehow{at}biology.sdu.dk, mcarmen.pineda{at}gmail.com, ckenkel{at}usc.edu, plaffy{at}aims.gov.au, aduckworth1{at}gmail.com, michael.renton{at}uwa.edu.au, peta.clode{at}uwa.edu.au, N.Webster{at}aims.gov.au, https://www.dropbox.com/sh/82ue5l16n4xzxww/AABENUi-Cdbm_z-6x4Gj3qICa?dl=0, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA639714, https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA639798. Species Carterispongia clathrata (Carter, 1881) accepted as Carteriospongia clathrata (Carter, 1881) accepted as Hyattella intestinalis (Lamarck, 1814) (misspelling of genus name) Species Carterispongia foliascens (Pallas, 1766) accepted as Carteriospongia foliascens (Pallas, 1766) accepted as Phyllospongia foliascens (Pallas, 1766 . Revision of the North American Porifer: With Remarks Upon the Foreign Species. Oscules small, visible, may be raised above surface. In: P. Hutchings, M.J. Kingsford & I.O. Figure 3. 2). Cladus: Holozoa Journal of the Royal Statistical Society Series B. Berry D, Widder S. Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Rank abundance plots were created using BiodiversityR 2.5-2 (Kindt & Coe, 2005) and diversity metrics using rarefied data (n = 7,370 sequences) were created using vegan 2.3-0 (Oksanen et al., 2015), both packages in R. Principal coordinate analysis (PCO) was used to visually compare C. foliascens communities and PERMANOVA, using 9,999 permutations, was used to test differences in community structure between the different geographic locations. Oscules 1-2 mm. Effects of depth and light on secondary metabolites and cyanobacterial symbionts of the sponge. Could some coral reefs become sponge reefs as our climate changes? Novel reference transcriptomes for the sponges Carteriospongia I Taxonomy and Phylogenetic Relationships. source for nomenclature or classification - please consult the From the union of OTUs, we extracted the abundance of Cyanobacteria and Bacteroidetes and calculated their ratios in both environments. P.S.Z.N.I. Records of the Western Australian Museum. Supplement 77: 89-103. Carteriospongia foliascens. (2002 [2004]). Microbial communities in both healthy and abnormal sponge tissues and adjacent seawater were compared to check the influences of these abnormalities on sponge-associated microbes. Lendenfeld, R. von. Phylum: Porifera The following information was supplied regarding the deposition of DNA sequences: Processed sequences can be downloaded from the following portal: http://qiita.microbio.me/; study number 1740. Evidence for genetic structuring and limited dispersal - Springer Checklist of marine biota of China seas. Interestingly, the distribution of C. foliascens at inshore reefs of the Great Barrier Reef is restricted to the intertidal with no individuals evident in adjacent subtidal habitats. Therefore, the highest mean relative abundances of this group in sponges collected from inshore locations, where nutrients are likely abundant, are consistent with one of the proposed physiologies for Bacteroidetes. Record of shallow-water sponges in Simeulue Island, Aceh Province, Indonesia. Maximum likelihood tree of the OTUs (left), with bootstrap (1,000 replicates) percentages greater than 50% indicated. Oscules small, visible, may be raised above surface. Microb Ecol. Larval Behaviours and Their Contribution to the Distribution of the & Van Soest, R.W.M. As a library, NLM provides access to scientific literature. Scalarane-Type Bishomosesterterpenes from the Sponge Phyllospongia Spongien von Sansibar. PMC Simister R, Taylor MW, Tsai P, Webster N. Sponge-microbe associations survive high nutrients and temperatures. (eds) Systema Porifera - A guide to the classification of sponges. RNA extracted from all treatments was pooled for each species, using equal concentrations from each clone. PDF Novel reference transcriptomes for the sponges Carteriospongia Chapter 6.1. Netherlands Indian Ocean Programme. Here we compared the microbiome of an ecologically important sponge species, Carteriospongia foliascens, over a large geographic area and identified environmental factors likely responsible for driving microbial community differences between inshore and offshore locations using co-occurrence networks (NWs). This site needs JavaScript to work properly. Eleven new scalarane sesterterpenoids, including three 20,24-bishomo-25-norscalaranes, carteriofenones A-C (1-3), and eight 20,24-bishomoscalaranes, carteriofenones D-K (4-11), along with two known analogues (12 and 13), were obtained from the marine sponge Carteriospongia foliascens collected from the South China Sea. In: J. van der Land (ed.) Liu, J.Y. Fromont, J.; Vanderklift, M.A. A large biogeographic signal was evident at the OTU level despite similar phyla level diversity being observed across all geographic locations. (2009). Here, individuals of the sponge Carteriospongia foliascens under abnormal status were collected from the Rabigh Bay along the Red Sea coast. In contrast, Cyanobacteria OTUs comprised only 10% of the most abundant OTUs, yet a single cyanobacterial OTU (Otu5304) dominated communities from all locations, with the exception of Torres Strait, where Cyanobacteria Otu115 was more abundant (Fig. Hoegh-Guldberg (eds). Due to the close proximity of Fantome and Orpheus Island (<10 km apart), both islands are represented by a single Palm Islands symbol. (A) Venn Diagram of OTUs present in two co-occurrence networks inferred for sponge microbiome at inshore (IN) and offshore (OFF) sampling locations. Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. To test our hypothesis that opposing environmental conditions related to turbidity and light (based on established studies: Fabricius et al., 2014; Furnas, 2003) induce a shift in the sponge microbiome between inshore and offshore locations, we inferred two co-occurrence NWs for each of these locations and identified OTUs present and with significant co-occurrence relationships for the two habitats. Thus, by overlapping the inferred NWs we selected ecologically meaningful correlation patterns in both locations i.e., patterns that are either common or unique to each location. 2020: baaa062. (2009). Carteriospongia foliascens hosts an exceptionally diverse variety of microbial life, mainly Candidatus Synechococcus. Morphology Thin walled cup with ridged patterned surface and short basal stalk/s. Map of Australia showing the sampling sites for this study. Both NWs show comparable size (NI = 93, EI = 98; NO = 133, EO = 396 where N = Nodes and E = Edges), but when comparing their fragmentation (e.g., the relative fraction of disconnected compartments within a NW) we find that the inshore NW is more fragmented (f = 0.61) than the offshore counterpart (f = 0.52). Subsequently, we performed a False Discovered Rate (FDR) correction according to Benjamini & Hochberg, (1995). Thomas F, Hehemann J-H, Rebuffet E, Czjzek M, Michel G. Environmental and gut. 4 and Table S4). Unique sequences were aligned against a trimmed SILVA database (v102, trimmed to the V4 region) and chimeric sequences identified by UCHIME (Edgar et al., 2011) were removed. 2022 Jun 29;10(1):99. doi: 10.1186/s40168-022-01286-z. 2). As inshore conditions are characterized by strong changes in the environment due to run-off events and variable turbidity (Fabricius et al., 2014), these results are in qualitative agreement with earlier work, showing that physical disturbance contributes to community fragmentation (Widder et al., 2014). Van Soest, R.W.M. Carteriospongia) foliascens, P. lamellosa, P. madagascarensis, P. papyracea, Carteriospongia (syn. Also of interest was the finding that core Cyanobacteria OTUs in the two photosynthetic species Carteriospongia foliascens and Cymbastela coralliophila are not disrupted by sediments, even at the highest SSC. For instance, samples from Fantome and Orpheus Islands have the highest relative abundance of Bacteroidetes, whereas Cyanobacteria are more abundant in samples from Torres Strait and Scott Reef (both 42%). Epub 2022 Jul 29. 3B). Despite the patterns depicted in the ordination, particularly for Fantome and Orpheus Islands, the overall level of similarity (as determined by CLUSTER analysis) in microbial composition at the OTU level was 20% and all locations were significantly different (PERMANOVA, Pseudo-F6,65 = 5.57, p = 0.001). Bacteroidetes found in the environment are known for their involvement in degrading DOM (Thomas et al., 2011) with both laboratory and in situ studies demonstrating the degradation of cellulose and chitin, components of DOM (Kirchman, 2002). While samples possessed similar phyla-level diversity, sharing 60% similarity at the phyla-level vs. 20% at the OTU-level (percentages from CLUSTER analysis), the relative abundances of OTUs in some phyla varied between locations (Fig. and transmitted securely. Image detail. Disclaimer. Subfamilia: Phyllospongiinae official website and that any information you provide is encrypted Database (Oxford). An official website of the United States government. An official website of the United States government. Unable to load your collection due to an error, Unable to load your delegates due to an error. nov. and Polyfibrospongia kulit sp. Find diseases associated with this biological target and compounds tested against it in bioassay experiments. Larval behaviours and their contribution to the distribution of the intertidal coral reef sponge Carteriospongia foliascens. (1897). Webster NS, Botte ES, Soo RM, Whalan S. The larval sponge holobiont exhibits high thermal tolerance. Family Thorectidae Bergquist, 1978. [Ruiyu] (ed.). relevant scientific literature for the most reliable information. 2011 Apr;34(2):116-26. doi: 10.1016/j.syapm.2011.01.003. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Microbiol Spectr. Phenology of sexual reproduction in the common coral reef sponge For faster navigation, this Iframe is preloading the Wikiwand page for Carteriospongia foliascens . Fabricius KE, Logan M, Weeks S, Brodie J. In: Hooper, J.N.A. Received 2015 Aug 6; Accepted 2015 Nov 3. Setiawan, E.; Muzaki, F.K. 2022 Nov;16(11):2503-2512. doi: 10.1038/s41396-022-01296-7. Similar patterns of phyla-level similarity and OTU-level disparity have previously been reported for other sponge species (Simister et al., 2013; Luter, Gibb & Webster, 2014). Fromont, J.; Vanderklift, M.A. Increased agriculture of coastal Australian land since European settlement (Kroon, Kuhnert & Henderson, 2012), and associated land run-off to coastal waters, has been a significant contributor to turbidity of the inshore GBR(Furnas, 2003). Phyla with a Spearman Rank correlation greater than 0.8 are overlaid on the plot as vectors, with the number of corresponding OTUs listed in parentheses and identified in Table S3. The microbiome of C. foliascens exhibited exceptionally high microbial richness, with more than 9,000 OTUs identified at 97% sequence similarity. The https:// ensures that you are connecting to the The following information was supplied regarding data availability: Processed sequences can be downloaded from the following portal: http://qiita.microbio.me/; study number 1740. The community composition of samples from the inshore Fantome and Orpheus Islands (separated by <10 km) were tightly grouped, with the communities at these two locations being separate from GBR communities at Green Island and Davies Reef (Fig. Cite this page A large biogeographic signal was evident at the OTU level despite similar phyla level diversity being observed across all geographic locations. Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. Representative sequences were classified based on the SILVA database, using a minimum cutoff of 60%. Novel reference transcriptomes for the sponges Carteriospongia Responses from these types of environmental conditions range from sponges maintaining highly conserved microbial communities, irrespective of ambient conditions, through to highly sensitive communities that shift composition and function in response to the changing environment. Light as a factor determining the distribution of sponges across the central Great Barrier Reef. This article about a demosponge is a stub. Torsten Thomas is an Academic Editor for PeerJ. CSIRO Publishing: Melbourne. 2). 2013;19:26132624. Sponges are well known for hosting dense and diverse microbial communities, but how these associations vary with biogeography and environment is less clear. Co-occurrence NWs revealed a consistent increase in the proportion of Cyanobacteria over Bacteroidetes between turbid inshore and oligotrophic offshore locations, suggesting that the specialist microbiome of C. foliascens is driven by environmental factors. Heidi M. Luter and Stefanie Widder conceived and designed the experiments, analyzed the data, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper. This service is powered by LifeWatch Belgium, https://www.biodiversitylibrary.org/page/6019361, https://biodiversity.org.au/afd/taxa/PORIFERA/checklist, To Biodiversity Heritage Library (1 publication), To GenBank (3910 nucleotides; 0 proteins), To Sponge Barcoding Database (Carteriospongia foliascens), To Yale Peabody Museum of Natural History (YPM IZ 005031.PR). Sponges. Federal government websites often end in .gov or .mil. 1028-1050. Carteriospongia) foliascens, P. lamellosa, P. madagascarensis, P. papyracea, Carteriospongia (syn. 2017 ); hence, investigating the transcriptomes of different sponge species can provide insight into the evolution of metazoans and their gene expression profiles. Bethesda, MD 20894, Web Policies Would you like email updates of new search results? Species Carteriospongia cordifolia. Volume 12. Samples were collected under the Great Barrier Reef Marine Park Authority Permit #G12/35236.1. Processed sequences and meta-data are available via the following portal (http://qiita.microbio.me/) under study number 1740. Torsten Thomas is an Academic Editor for PeerJ. Deep sequencing reveals diversity and community structure of complex microbiota in five Mediterranean sponges. PLoS ONE. Taxonavigation Taxonavigation: Dictyoceratida Familia: Thorectidae Subfamilia: Phyllospongiinae Genus: Carteriospongia Species: Carteriospongia foliascens Name Carteriospongia foliascens ( Pallas, 1766) Synonyms: Cacospongia poculum Selenka, 1867 Carteriospongia elegans (Lendenfeld, 1888) Carteriospongia fissurata (Lamarck, 1814) Carteriospongia foliascens | Taxonomy - PubChem Microbial diversity in marine biofilms along a water quality gradient on the Great Barrier Reef. Behaviour Chapter 6.1. The PubMed wordmark and PubMed logo are registered trademarks of the U.S. Department of Health and Human Services (HHS). Cook, S. de C.; Bergquist, P.R. unaccepted (genus transfer and junior synonym) Environment. Gao ZM, Wang Y, Lee OO, Tian RM, Wong YH, Bougouffa S, Batang Z, Al-Suwailem A, Lafi FF, Bajic VB, Qian PY. Funding support for HML was provided through a NAMRA Postdoctoral Fellowship. per sample. Most experimental studies assessing how sponge microbial communities respond to different environmental conditions have demonstrated host-specific microbial responses to temperature, nutrients and sediments (Webster et al., 2011; Luter, Whalan & Webster, 2012; Simister et al., 2012a; Simister et al., 2012b; Fan et al., 2013; Pita et al., 2013; Luter, Gibb & Webster, 2014). A significant correlation was identified between distance matrices from the total dataset and the 30 most abundant OTUs (RELATE; Rho = 0.939, P = 0.001), further supporting the consistency between the two datasets. Melbourne, CSIRO. Here we compared the microbiome of an ecologically important sponge species, Carteriospongia foliascens, over a large geographic area and identified environmental factors likely responsible for driving microbial community differences between inshore and offshore locations using co-occurrence networks (NWs). Notably, all Cyanobacteria OTUs share high sequence similarity with clones (Otu5304 [98%] and Otu2788 [97%]: {"type":"entrez-nucleotide","attrs":{"text":"KP792324","term_id":"821184232"}}KP792324 98 & Otu115 [98%]: {"type":"entrez-nucleotide","attrs":{"text":"KJ008094","term_id":"597437704"}}KJ008094) from the sponge-specific clade Synechococcus spongiarum (Steindler et al., 2005; Gao et al., 2014b). Journal of Experimental Marine Biology and Ecology. The plot was constructed using operational taxonomic units (OTUs) that represented greater than 1% of the overall community, which accounted for 87% of the total relative abundance. (2002 [2004]). ( . The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.